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24 tools found in: Digital atlasing

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Name Rating Modification Date Maturity Downloads Image

3d Brain Atlas Reconstructor

Oct 02, 2011 Intermediate View all downloads

3d Brain Atlas Reconstructor (3dBAR, http://www.3dbar.org) allows reconstructing 3-D models of brain structures from 2-D delineations.

Allen Brain Atlas API

May 12, 2010 Stable View all downloads

2D and 3D Programmatic Access to the ABA Mouse Brain Project..

Atlas3D

Jun 20, 2012 Stable View all downloads

Atlas3D is a multiplatform visualization tool which allows import, linear transformation, cutting and export of various data formats in 3D atlas space.

Digital Brain

Jan 17, 2012 Planning View all downloads

Create a Publicly accessible signature over different channels..

Fiji

May 14, 2010 Stable View all downloads

Fiji is an image processing package based on ImageJ.

Free-D

Jan 25, 2013 Stable View all downloads

3D reconstruction, spatial normalization, and quantification of biological (e.g., neuroanatomical) structures from image stacks (histological, confocal, MRI, etc.).

INCF Cloud App

Jul 26, 2011 Planning View all downloads

A bundle including iRODS, Web Image Browser, INCF DAI API, Whole Brain Catalog, and much more.

INCF Local Hub

May 12, 2010 Experimental View all downloads

API and reference implementations of an INCF hub.

INCF Neuron Registry

Jun 13, 2011 Planning View all downloads

INCF internal project for developing and managing the user interface for the neuron registry..

Interactive diagram of the anatomical connectivity in the rat hippocampal formation, parahippocampal region and retrosplenial cortex..

Oct 14, 2010 Stable View all downloads

The interactive diagram provides a customizable display of all known anatomical connections between and within the hippocampal formation, parahippocampal and retrosplenial cortex region in the rat.

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