http://software.incf.net/search/ Latest changes to your search for: in: Digital atlasing en-us Wed, 24 Mar 2010 10:13:45 -0000 http://software.incf.org/software/3d-brain-atlas-reconstructor 3d Brain Atlas Reconstructor (3dBAR, http://www.3dbar.org) allows reconstructing 3-D models of brain structures from 2-D delineations. http://software.incf.org/software/3d-brain-atlas-reconstructor http://software.incf.org/software/allen-brain-atlas-api 2D and 3D Programmatic Access to the ABA Mouse Brain Project.. http://software.incf.org/software/allen-brain-atlas-api http://software.incf.org/software/atlas3d Atlas3D is a multiplatform visualization tool which allows import, linear transformation, cutting and export of various data formats in 3D atlas space. http://software.incf.org/software/atlas3d http://software.incf.org/software/digital-brain Create a Publicly accessible signature over different channels.. http://software.incf.org/software/digital-brain http://software.incf.org/software/fiji Fiji is an image processing package based on ImageJ. http://software.incf.org/software/fiji http://software.incf.org/software/free-d 3D reconstruction, spatial normalization, and quantification of biological (e.g., neuroanatomical) structures from image stacks (histological, confocal, MRI, etc.). http://software.incf.org/software/free-d http://software.incf.org/software/incf-cloud-app A bundle including iRODS, Web Image Browser, INCF DAI API, Whole Brain Catalog, and much more. http://software.incf.org/software/incf-cloud-app http://software.incf.org/software/incf-local-hub API and reference implementations of an INCF hub. http://software.incf.org/software/incf-local-hub http://software.incf.org/software/incf-neuron-registry INCF internal project for developing and managing the user interface for the neuron registry.. http://software.incf.org/software/incf-neuron-registry http://software.incf.org/software/interactive-diagram-of-the-anatomical-connectivity-in-the-rat-hippocampal-formation-and-parahippocampal-region The interactive diagram provides a customizable display of all known anatomical connections between and within the hippocampal formation, parahippocampal and retrosplenial cortex region in the rat. http://software.incf.org/software/interactive-diagram-of-the-anatomical-connectivity-in-the-rat-hippocampal-formation-and-parahippocampal-region http://software.incf.org/software/itools-resourceome iTools is a meta-resource for managing, traversal, discovery and exploration of data, tools and services via human and machine interfaces. http://software.incf.org/software/itools-resourceome http://software.incf.org/software/copy_of_loni-pipeline-environment The LONI Pipeline is a free workflow application primarily aimed at neuroimaging researchers.. http://software.incf.org/software/copy_of_loni-pipeline-environment http://software.incf.org/software/loni-viz LONI_Viz, is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views.. http://software.incf.org/software/loni-viz http://software.incf.org/software/mbat Mouse BIRN Atlasing Toolkit.. http://software.incf.org/software/mbat http://software.incf.org/software/neuart A neuroinformatics system for indexing neuroanatomical data using brain atlases.. http://software.incf.org/software/neuart http://software.incf.org/software/neurolex-wiki The NeuroLex project is a dynamic lexicon of neuroscience concepts. http://software.incf.org/software/neurolex-wiki http://software.incf.org/software/neuropub-visualizer The NeuroPub Visualizer is your personal library of statistical parametric maps for functional and structural neuroimages on your iPad.. http://software.incf.org/software/neuropub-visualizer http://software.incf.org/software/scalable-brain-atlas The Scalable Brain Atlas (SBA) is a web-based interactive brain atlas which provides instant access to atlas templates of various species.. http://software.incf.org/software/scalable-brain-atlas http://software.incf.org/software/shiva Synchronized Histological Image Viewing Architecture.. http://software.incf.org/software/shiva http://software.incf.org/software/trakem2 Software for neural circuit reconstruction from LSM or EM image data sets. http://software.incf.org/software/trakem2 http://software.incf.org/software/incfdai Python API for the INCF Digital Atlasing infrastructure.. http://software.incf.org/software/incfdai http://software.incf.org/software/waxholm-space Waxholm Space is a coordinate-based reference space for the mapping and registration of neuroanatomical data in the mouse brain.. http://software.incf.org/software/waxholm-space http://software.incf.org/software/whole-brain-catalog An open source multi-scale virtual catalog of the mouse brain.. http://software.incf.org/software/whole-brain-catalog http://software.incf.org/software/whole-brain-catalog-mobile Whole Brain Catalog Mobile is an image viewing engine for high resolution neuroscience data.. http://software.incf.org/software/whole-brain-catalog-mobile