http://software.incf.net/search/ Latest changes to your search for: in: Computational neuroscience en-us Wed, 24 Mar 2010 10:13:45 -0000 http://software.incf.org/software/visn Visn software.. http://software.incf.org/software/visn http://software.incf.org/software/pandora Database analysis and visualization of simulated and recorded electrophysiological data.. http://software.incf.org/software/pandora http://software.incf.org/software/neuronvisio Neuronvisio is a Graphical User Interface for NEURON simulator enviroment.. http://software.incf.org/software/neuronvisio http://software.incf.org/software/csa This is a demonstration implementation in Python of the Connection-Set Algebra (Djurfeldt, 2012).. http://software.incf.org/software/csa http://software.incf.org/software/nest Software for large-scale neuronal network simulations.. http://software.incf.org/software/nest http://software.incf.org/software/moose-2 MOOSE is the Multiscale Object Oriented Simulation Environment for modeling and simulation in Neuroscience and Systems Biology.. http://software.incf.org/software/moose-2 http://software.incf.org/software/spyke-viewer Spyke Viewer is a multi-platform GUI application for navigating, analyzing and visualizing electrophysiological datasets.. http://software.incf.org/software/spyke-viewer http://software.incf.org/software/sumatra Sumatra is a tool for managing and tracking projects based on numerical simulation and/or analysis, with the aim of supporting reproducible research.. http://software.incf.org/software/sumatra http://software.incf.org/software/trentool Trentool is a software for transfer entropy analysis in neural data. http://software.incf.org/software/trentool http://software.incf.org/software/libneurosim Generic support library for neuronal simulators.. http://software.incf.org/software/libneurosim http://software.incf.org/software/nineml NineML: APIs and documentation.. http://software.incf.org/software/nineml http://software.incf.org/software/done-detection-of-outlier-neurons This tool implements a morphology-based approach for the automatic identification of outlier neurons. http://software.incf.org/software/done-detection-of-outlier-neurons http://software.incf.org/software/lfpy LFPy is a Python module for simulations of extracellular field potentials.. http://software.incf.org/software/lfpy http://software.incf.org/software/neo Neo is a package for representing electrophysiology data in Python, together with support for reading a wide range of neurophysiology file formats, including Spike2, NeuroExplorer, AlphaOmega, Axon, Blackrock, Plexon, Tdt, and support for writing to a subset of these formats plus non-proprietary formats including HDF5. http://software.incf.org/software/neo http://software.incf.org/software/mexi MEXI, MUSIC EXternal Interface, is a generic interface making MUSIC-enabled applications running on super-computers capable of communicating with the outside world. http://software.incf.org/software/mexi http://software.incf.org/software/probability-distributome-project The Probability Distributome is an Interactive Web-based Resource for exploring and interrogating diverse Probability Distributions. http://software.incf.org/software/probability-distributome-project http://software.incf.org/software/copy_of_loni-pipeline-environment The LONI Pipeline is a free workflow application primarily aimed at neuroimaging researchers.. http://software.incf.org/software/copy_of_loni-pipeline-environment http://software.incf.org/software/statistics-online-computational-resource-socr The Statistics Online Computational Resource (SOCR) provides portable online aids and computational libraries for probability and statistics education, technology based instruction and statistical computing.. http://software.incf.org/software/statistics-online-computational-resource-socr http://software.incf.org/software/sinomo-singular-node-motifs This analysis-tool identifies singular node motifs in a network. http://software.incf.org/software/sinomo-singular-node-motifs http://software.incf.org/software/ted Time Encoding and Decoding Toolbox.. http://software.incf.org/software/ted http://software.incf.org/software/pynn A Python package for simulator-independent specification of neuronal network models. http://software.incf.org/software/pynn http://software.incf.org/software/isoitools The programs in this set of tools calculate isolation quality of clusters obtained from neural extracellular field / ensemble recordings using information-theoretic measures.. http://software.incf.org/software/isoitools http://software.incf.org/software/neuranim NeurAnim is a research aid for computational neuroscience.. http://software.incf.org/software/neuranim http://software.incf.org/software/genn GeNN is a GPU enhanced Neuronal Network simulation environment based on code generation for NVidia CUDA. http://software.incf.org/software/genn http://software.incf.org/software/erplab-toolbox ERPLAB Toolbox is a set of open source, freely available Matlab routines for analyzing ERP data.. http://software.incf.org/software/erplab-toolbox http://software.incf.org/software/trakem2 Software for neural circuit reconstruction from LSM or EM image data sets. http://software.incf.org/software/trakem2 http://software.incf.org/software/the-trees-toolbox A Matlab toolbox to generate, edit, visualize and analyze neuronal structure. http://software.incf.org/software/the-trees-toolbox http://software.incf.org/software/sigtool sigTOOL provides a programming and analysis environment for processing electrophysiological data within MATLAB.. http://software.incf.org/software/sigtool http://software.incf.org/software/ikaros Simulator for system-level brain models.. http://software.incf.org/software/ikaros http://software.incf.org/software/modular-toolkit-for-data-processing-mdp Modular toolkit for Data Processing (MDP) is a Python data processing framework.. http://software.incf.org/software/modular-toolkit-for-data-processing-mdp http://software.incf.org/software/splitneuron SplitNeuron is a completely new approach to large-scale, biologically plausible, neural-network simulation.. http://software.incf.org/software/splitneuron http://software.incf.org/software/neurospaces Development center for software components of a neuroscience simulator. http://software.incf.org/software/neurospaces http://software.incf.org/software/3d-slicer An extensible, cross-platform, totally open research platform for image computing. http://software.incf.org/software/3d-slicer http://software.incf.org/software/information-breakdown-toolbox-ibtb The toolbox has several key features that make it useful to the neuroscience community and that will widen the domain of application of information theory to neuro- science. http://software.incf.org/software/information-breakdown-toolbox-ibtb http://software.incf.org/software/neuroml NeuroML: a model description language for the computational neuroscience community.. http://software.incf.org/software/neuroml http://software.incf.org/software/music C++ library implementing an API which allows large scale neuronal network simulators to exchange data during runtime. http://software.incf.org/software/music http://software.incf.org/software/xoonips XooNIps is a XOOPS-based infrastructure for the neuroinformatics platforms.. http://software.incf.org/software/xoonips http://software.incf.org/software/concierge Personal Database Software for Digital Research Resources.. http://software.incf.org/software/concierge http://software.incf.org/software/iqr iqr is a simulation software to graphically design and control large-scale neuronal models.. http://software.incf.org/software/iqr http://software.incf.org/software/whole-brain-catalog An open source multi-scale virtual catalog of the mouse brain.. http://software.incf.org/software/whole-brain-catalog http://software.incf.org/software/pydstool Simulation and analysis scripting environment environment for dynamical systems models of biophysical systems (ODEs, DAEs, maps, and hybrid systems).. http://software.incf.org/software/pydstool http://software.incf.org/software/cnslive LiveCD distribution for Computational Neuroscience Software.. http://software.incf.org/software/cnslive http://software.incf.org/software/pcsim PCSIM is a tool for distributed simulation of heterogeneous networks composed of different point neuron models. http://software.incf.org/software/pcsim http://software.incf.org/software/information-breakdown-toolbox An open source software package for the information theoretic analysis of neural data.. http://software.incf.org/software/information-breakdown-toolbox http://software.incf.org/software/brahms Framework for modular model development. http://software.incf.org/software/brahms http://software.incf.org/software/brian-2 Brian is a simulator for spiking neural networks, written in Python.. http://software.incf.org/software/brian-2 http://software.incf.org/software/pyentropy A Python library for estimation of entropy and information theoretic quantities. http://software.incf.org/software/pyentropy http://software.incf.org/software/pgenesis PGENESIS is a software package that enables the GENESIS neural simulator to run on a variety of parallel machines (including multi-core workstations). http://software.incf.org/software/pgenesis http://software.incf.org/software/genesis The GENESIS simulator (the GEneral NEural SImulation System) is used for creating biologically realistic computer models of neural systems.. http://software.incf.org/software/genesis http://software.incf.org/software/neurotools NeuroTools is a collection of tools to support all tasks associated with a neural simulation project which are not handled by the simulation engine. http://software.incf.org/software/neurotools http://software.incf.org/software/bsmart A Matlab/C toolbox for Analyzing Brain Circuits.. http://software.incf.org/software/bsmart http://software.incf.org/software/topographica Topographica is a software package for computational modeling of neural maps, such as those in sensory and motor systems in mammals. http://software.incf.org/software/topographica http://software.incf.org/software/sa3d-spatial-analysis-3d Matlab GUI for the modelling and analysis of neuronal positioning in three dimensions.. http://software.incf.org/software/sa3d-spatial-analysis-3d http://software.incf.org/software/xnbc-v910 XNBC is an open source simulation tool for the neuroscientists interested in simulating biological neural networks using a user friendly tool. http://software.incf.org/software/xnbc-v910 http://software.incf.org/software/carmen CARMEN is a virtual laboratory for neurophysiology - enabling collaborative exploitation of data, analysis code and expertise. http://software.incf.org/software/carmen http://software.incf.org/software/neurofitter Neurofitter is software for parameter tuning of electrophysiological neuron models. http://software.incf.org/software/neurofitter http://software.incf.org/software/lddmm-volume LDDMM-volume provides direct comparison and quantization of morphometric changes in shapes. http://software.incf.org/software/lddmm-volume http://software.incf.org/software/allen-brain-atlas-api 2D and 3D Programmatic Access to the ABA Mouse Brain Project.. http://software.incf.org/software/allen-brain-atlas-api http://software.incf.org/software/finding-information-in-neural-data-find An open-source analysis toolbox for multiple-neuron recordings and network simulations.. http://software.incf.org/software/finding-information-in-neural-data-find http://software.incf.org/software/xml-based-clinical-experiment-data-exchange-schema The XCEDE schema provides an extensive metadata hierarchy for describing and documenting research and clinical studies. http://software.incf.org/software/xml-based-clinical-experiment-data-exchange-schema http://software.incf.org/software/itools-resourceome iTools is a meta-resource for managing, traversal, discovery and exploration of data, tools and services via human and machine interfaces. http://software.incf.org/software/itools-resourceome http://software.incf.org/software/neuroconstruct neuroConstruct has been designed to simplify creation, visualisation, simulation and analysis of complex networks of biologically realistic neurons. http://software.incf.org/software/neuroconstruct http://software.incf.org/software/pynn-3-2 A Python package for simulator-independent specification of neuronal network models. http://software.incf.org/software/pynn-3-2 http://software.incf.org/software/myfirstneuron .. http://software.incf.org/software/myfirstneuron