http://software.incf.net/search/ Latest changes to your search for: in: Neuroimaging en-us Wed, 24 Mar 2010 10:13:45 -0000 http://software.incf.org/software/freesurfer FreeSurfer is a set of automated tools for reconstruction of the brain’s cortical surface from structural MRI data, and overlay of functional MRI data onto the reconstructed surface. http://software.incf.org/software/freesurfer http://software.incf.org/software/imagej ImageJ is a Java-based image processing and analysis program developed at the National Institutes of Health. http://software.incf.org/software/imagej http://software.incf.org/software/itools-resourceome iTools is a meta-resource for managing, traversal, discovery and exploration of data, tools and services via human and machine interfaces. http://software.incf.org/software/itools-resourceome http://software.incf.org/software/xml-based-clinical-experiment-data-exchange-schema The XCEDE schema provides an extensive metadata hierarchy for describing and documenting research and clinical studies. http://software.incf.org/software/xml-based-clinical-experiment-data-exchange-schema http://software.incf.org/software/loni-viz LONI_Viz, is a 3-D viewer that allows volumetric data display and manipulation of axial, sagittal and coronal views.. http://software.incf.org/software/loni-viz http://software.incf.org/software/mbat Mouse BIRN Atlasing Toolkit.. http://software.incf.org/software/mbat http://software.incf.org/software/brainsuite2 BrainSuite2 is used for cortical surface extraction.. http://software.incf.org/software/brainsuite2 http://software.incf.org/software/shiva Synchronized Histological Image Viewing Architecture.. http://software.incf.org/software/shiva http://software.incf.org/software/allen-brain-atlas-api 2D and 3D Programmatic Access to the ABA Mouse Brain Project.. http://software.incf.org/software/allen-brain-atlas-api http://software.incf.org/software/lddmm-volume LDDMM-volume provides direct comparison and quantization of morphometric changes in shapes. http://software.incf.org/software/lddmm-volume http://software.incf.org/software/fastica The standard software for independent component analysis (ICA). http://software.incf.org/software/fastica http://software.incf.org/software/mean-machine Matlab-based software for analyzing EEG data.. http://software.incf.org/software/mean-machine http://software.incf.org/software/bsmart A Matlab/C toolbox for Analyzing Brain Circuits.. http://software.incf.org/software/bsmart http://software.incf.org/software/neurolex-wiki The NeuroLex project is a dynamic lexicon of neuroscience concepts. http://software.incf.org/software/neurolex-wiki http://software.incf.org/software/scalable-brain-atlas The Scalable Brain Atlas (SBA) is a web-based interactive brain atlas which provides instant access to atlas templates of various species.. http://software.incf.org/software/scalable-brain-atlas http://software.incf.org/software/whole-brain-catalog An open source multi-scale virtual catalog of the mouse brain.. http://software.incf.org/software/whole-brain-catalog http://software.incf.org/software/incf-local-hub API and reference implementations of an INCF hub. http://software.incf.org/software/incf-local-hub http://software.incf.org/software/fiji Fiji is an image processing package based on ImageJ. http://software.incf.org/software/fiji http://software.incf.org/software/helmholtz A framework for creating neuroscience databases based on the Django web-development framework.. http://software.incf.org/software/helmholtz http://software.incf.org/software/jim Jim is a medical image display package that allows easy viewing and analysis of Magnetic Resonance, x-ray CT and other types of medical image.. http://software.incf.org/software/jim http://software.incf.org/software/loni-debabeler The LONI Debabeler manages the conversion of imaging data from one file format and convention to another.. http://software.incf.org/software/loni-debabeler http://software.incf.org/software/3d-slicer An extensible, cross-platform, totally open research platform for image computing. http://software.incf.org/software/3d-slicer http://software.incf.org/software/neuropub-visualizer The NeuroPub Visualizer is your personal library of statistical parametric maps for functional and structural neuroimages on your iPad.. http://software.incf.org/software/neuropub-visualizer http://software.incf.org/software/trakem2 Software for neural circuit reconstruction from LSM or EM image data sets. http://software.incf.org/software/trakem2 http://software.incf.org/software/erplab-toolbox ERPLAB Toolbox is a set of open source, freely available Matlab routines for analyzing ERP data.. http://software.incf.org/software/erplab-toolbox http://software.incf.org/software/axonal-beading-and-microtubule-quantification Interactive image analysis software for quantifying axonal beading morphology and focal microtubule loss using phase and fluorescent images a neuron. http://software.incf.org/software/axonal-beading-and-microtubule-quantification http://software.incf.org/software/synapseem Program for analyzing electron microscopic (EM) images of synapses.. http://software.incf.org/software/synapseem http://software.incf.org/software/sinomo-singular-node-motifs This analysis-tool identifies singular node motifs in a network. http://software.incf.org/software/sinomo-singular-node-motifs http://software.incf.org/software/statistics-online-computational-resource-socr The Statistics Online Computational Resource (SOCR) provides portable online aids and computational libraries for probability and statistics education, technology based instruction and statistical computing.. http://software.incf.org/software/statistics-online-computational-resource-socr http://software.incf.org/software/copy_of_loni-pipeline-environment The LONI Pipeline is a free workflow application primarily aimed at neuroimaging researchers.. http://software.incf.org/software/copy_of_loni-pipeline-environment http://software.incf.org/software/probability-distributome-project The Probability Distributome is an Interactive Web-based Resource for exploring and interrogating diverse Probability Distributions. http://software.incf.org/software/probability-distributome-project http://software.incf.org/software/done-detection-of-outlier-neurons This tool implements a morphology-based approach for the automatic identification of outlier neurons. http://software.incf.org/software/done-detection-of-outlier-neurons http://software.incf.org/software/neuroshare-matlab-library This is a matlab library for reading/writing Neuroshare (.nsn) files in Matlab.. http://software.incf.org/software/neuroshare-matlab-library http://software.incf.org/software/atlas3d-tool Research on 3d brain structures.. http://software.incf.org/software/atlas3d-tool http://software.incf.org/software/atlas3d Atlas3D is a multiplatform visualization tool which allows import, linear transformation, cutting and export of various data formats in 3D atlas space. http://software.incf.org/software/atlas3d http://software.incf.org/software/the-neurophysiological-biomarker-toolbox-nbt The Neurophysiological Biomarker Toolbox (NBT) is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers.. http://software.incf.org/software/the-neurophysiological-biomarker-toolbox-nbt http://software.incf.org/software/slice-drop-1 Instantly view scientific and medical imaging data in 3D using your web browser. http://software.incf.org/software/slice-drop-1 http://software.incf.org/software/trentool Trentool is a software for transfer entropy analysis in neural data. http://software.incf.org/software/trentool http://software.incf.org/software/sumatra Sumatra is a tool for managing and tracking projects based on numerical simulation and/or analysis, with the aim of supporting reproducible research.. http://software.incf.org/software/sumatra http://software.incf.org/software/waxholm-space Waxholm Space is a coordinate-based reference space for the mapping and registration of neuroanatomical data in the mouse brain.. http://software.incf.org/software/waxholm-space http://software.incf.org/software/synd SynD is an automated image analysis routine to analyze dendrite and synapse characteristics in immuno-fluorescence images. http://software.incf.org/software/synd http://software.incf.org/software/free-d 3D reconstruction, spatial normalization, and quantification of biological (e.g., neuroanatomical) structures from image stacks (histological, confocal, MRI, etc.). http://software.incf.org/software/free-d http://software.incf.org/software/visn Visn software.. http://software.incf.org/software/visn