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50 tools found in: Neuroimaging

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Name Rating Modification Date Maturity Downloads Image

XML-Based Clinical Experiment Data Exchange Schema (XCEDE) 2.0

May 12, 2010 Stable View all downloads

The XCEDE schema provides an extensive metadata hierarchy for describing and documenting research and clinical studies.

Whole Brain Catalog

May 12, 2010 Intermediate View all downloads

An open source multi-scale virtual catalog of the mouse brain..

Waxholm Space atlas of the Sprague Dawley rat brain

Apr 29, 2015 Intermediate View all downloads

Open access volumetric atlas based on high resolution MRI and DTI, anchored to both Waxholm Space and stereotaxic space, in ITK-SNAP and MBAT- ready formats..

Waxholm Space Atlas

Jun 30, 2014 Intermediate View all downloads

Waxholm Space is a coordinate-based reference space for the mapping and registration of neuroanatomical data in the mouse brain..


Apr 05, 2013 Planning View all downloads

Visn software..


Sep 29, 2014 Stable View all downloads

Trentool is a software for transfer entropy analysis in neural data.


Apr 08, 2011 Stable View all downloads

Software for neural circuit reconstruction from LSM or EM image data sets.

The Virtual Brain (TVB)

May 23, 2015 Stable View all downloads

TVB is a platform for whole brain network simulations, enabling the model- based generation of neuroimaging signals such as fMRI, EEG and MEG.

The Neurophysiological Biomarker Toolbox (NBT)

Jun 27, 2012 Planning View all downloads

The Neurophysiological Biomarker Toolbox (NBT) is an open source Matlab toolbox for the computation and integration of neurophysiological biomarkers..

SynD - Synapse and neurite detection

Nov 12, 2012 Intermediate View all downloads

SynD is an automated image analysis routine to analyze dendrite and synapse characteristics in immuno-fluorescence images.

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